1 00:00:08,950 --> 00:00:07,349 much of the science research on the 2 00:00:10,629 --> 00:00:08,960 international space station is devoted 3 00:00:12,470 --> 00:00:10,639 to learning more about how the human 4 00:00:14,390 --> 00:00:12,480 body deals with being in the weightless 5 00:00:15,829 --> 00:00:14,400 environment for a long period of time 6 00:00:18,230 --> 00:00:15,839 which will be the case during future 7 00:00:21,189 --> 00:00:18,240 missions to explore deep space 8 00:00:23,189 --> 00:00:21,199 one way to determine how people respond 9 00:00:26,070 --> 00:00:23,199 to changes in their environment is to 10 00:00:27,990 --> 00:00:26,080 sequence their dna and rna 11 00:00:30,230 --> 00:00:28,000 and now there is a portable tool 12 00:00:32,630 --> 00:00:30,240 designed for that task that is being 13 00:00:34,950 --> 00:00:32,640 tested on orbit it's called the 14 00:00:36,790 --> 00:00:34,960 biomolecule sequencer and this morning 15 00:00:38,869 --> 00:00:36,800 we're going to learn about that from the 16 00:00:42,069 --> 00:00:38,879 principal investigator dr aaron burton 17 00:00:43,430 --> 00:00:42,079 of the nasa johnson space center 18 00:00:44,790 --> 00:00:43,440 good morning welcome and thank you for 19 00:00:46,630 --> 00:00:44,800 joining us here at the international 20 00:00:49,350 --> 00:00:46,640 space station flight control room dr 21 00:00:50,790 --> 00:00:49,360 aaron burton thank you for joining us 22 00:00:52,709 --> 00:00:50,800 uh thanks for having me uh it's a 23 00:00:55,029 --> 00:00:52,719 pleasure to be here wait well let's 24 00:00:56,790 --> 00:00:55,039 first talk about the um 25 00:00:58,470 --> 00:00:56,800 the sequence in research can you explain 26 00:01:00,790 --> 00:00:58,480 to me just briefly how 27 00:01:02,950 --> 00:01:00,800 how did you get interested in in doing 28 00:01:04,789 --> 00:01:02,960 this research yeah well in uh graduate 29 00:01:06,789 --> 00:01:04,799 school i worked with functional rna 30 00:01:08,550 --> 00:01:06,799 molecules uh and we would look at the 31 00:01:09,910 --> 00:01:08,560 effects of mutations and how that 32 00:01:12,870 --> 00:01:09,920 changed the function 33 00:01:15,109 --> 00:01:12,880 uh of the molecule and so we did a lot 34 00:01:16,950 --> 00:01:15,119 of sequencing um 35 00:01:18,310 --> 00:01:16,960 from that perspective 36 00:01:21,270 --> 00:01:18,320 and so this 37 00:01:22,789 --> 00:01:21,280 project is kind of uh building on that 38 00:01:25,670 --> 00:01:22,799 research where we're looking at changes 39 00:01:28,310 --> 00:01:25,680 in dna and rna and how they might affect 40 00:01:30,630 --> 00:01:28,320 um humans and biology in general well 41 00:01:32,550 --> 00:01:30,640 it's really interesting so um 42 00:01:34,069 --> 00:01:32,560 what's also fascinating is from what i 43 00:01:35,910 --> 00:01:34,079 understand this is the first time we've 44 00:01:39,030 --> 00:01:35,920 actually been able to do this in space 45 00:01:40,789 --> 00:01:39,040 correct yes and so can you just kind of 46 00:01:42,389 --> 00:01:40,799 run me through what is 47 00:01:44,710 --> 00:01:42,399 how is this research about going to be 48 00:01:48,069 --> 00:01:44,720 valuable to us sequencing dna and rna in 49 00:01:49,510 --> 00:01:48,079 space okay um so i like to think of dna 50 00:01:52,069 --> 00:01:49,520 as sort of like a cookbook and then the 51 00:01:55,429 --> 00:01:52,079 rna would be the 52 00:01:56,870 --> 00:01:55,439 recipes in that cookbook um right sorry 53 00:01:59,429 --> 00:01:56,880 jeans will be uh recipes in that 54 00:02:00,870 --> 00:01:59,439 cookbook and then um if you want to keep 55 00:02:03,590 --> 00:02:00,880 your cookbook nice and clean you would 56 00:02:05,350 --> 00:02:03,600 make like a photocopy of each recipe 57 00:02:07,109 --> 00:02:05,360 and then if you wanted five people to be 58 00:02:08,790 --> 00:02:07,119 able to make your cheesecake you would 59 00:02:10,309 --> 00:02:08,800 give five people those cheesecake 60 00:02:12,309 --> 00:02:10,319 recipes 61 00:02:15,510 --> 00:02:12,319 and so that's kind of 62 00:02:17,270 --> 00:02:15,520 how rna works where rna is the 63 00:02:18,309 --> 00:02:17,280 functional 64 00:02:19,589 --> 00:02:18,319 or the 65 00:02:22,390 --> 00:02:19,599 molecules 66 00:02:23,589 --> 00:02:22,400 that go on to become proteins 67 00:02:25,830 --> 00:02:23,599 and so 68 00:02:27,830 --> 00:02:25,840 how an organism is responding to 69 00:02:30,470 --> 00:02:27,840 microgravity or another environment you 70 00:02:31,270 --> 00:02:30,480 can tell from its rna so certain rnas 71 00:02:33,030 --> 00:02:31,280 will be 72 00:02:34,869 --> 00:02:33,040 increased in production and other rnas 73 00:02:37,670 --> 00:02:34,879 will be decreased and by looking at the 74 00:02:38,949 --> 00:02:37,680 changes in the levels of rna 75 00:02:40,470 --> 00:02:38,959 as a 76 00:02:42,309 --> 00:02:40,480 as the organism is responding to that 77 00:02:44,229 --> 00:02:42,319 environment you could tell oh we want 78 00:02:46,309 --> 00:02:44,239 this pathway upregulated we want this 79 00:02:48,550 --> 00:02:46,319 pathway down regulated 80 00:02:50,070 --> 00:02:48,560 and then by looking at dna sequencing 81 00:02:52,070 --> 00:02:50,080 you can look for permanent changes so 82 00:02:53,270 --> 00:02:52,080 this would be like mutations 83 00:02:56,229 --> 00:02:53,280 or things that are going to change the 84 00:02:57,990 --> 00:02:56,239 cell permanently okay and so what about 85 00:03:00,550 --> 00:02:58,000 well i guess you know characterizing 86 00:03:02,149 --> 00:03:00,560 organisms that are in their environment 87 00:03:04,470 --> 00:03:02,159 and so in space but how is this going to 88 00:03:06,630 --> 00:03:04,480 help benefit for 89 00:03:08,550 --> 00:03:06,640 deep space exploration 90 00:03:10,550 --> 00:03:08,560 so one of the the limitations we have 91 00:03:11,910 --> 00:03:10,560 for 92 00:03:13,910 --> 00:03:11,920 exploration now is that we return the 93 00:03:17,110 --> 00:03:13,920 samples to earth and that's perfectly 94 00:03:18,630 --> 00:03:17,120 fine for iss because it's pretty close 95 00:03:20,390 --> 00:03:18,640 but as we move and you want to send 96 00:03:21,509 --> 00:03:20,400 humans to mars for example it's a nine 97 00:03:23,110 --> 00:03:21,519 month journey 98 00:03:25,190 --> 00:03:23,120 roughly and so you're not going to be 99 00:03:26,550 --> 00:03:25,200 able to return samples every month 100 00:03:28,789 --> 00:03:26,560 to do that sort of thing so we'd like to 101 00:03:30,229 --> 00:03:28,799 have the ability to do these processes 102 00:03:32,630 --> 00:03:30,239 in flight 103 00:03:34,789 --> 00:03:32,640 during the course of sequencing sure 104 00:03:36,229 --> 00:03:34,799 exploration 105 00:03:38,229 --> 00:03:36,239 so i understand you brought some 106 00:03:39,910 --> 00:03:38,239 show-and-tell here this is actually the 107 00:03:41,990 --> 00:03:39,920 the device that we have now in space 108 00:03:43,670 --> 00:03:42,000 correct um so it's going to launch next 109 00:03:46,390 --> 00:03:43,680 spring okay um so we're working on 110 00:03:49,190 --> 00:03:46,400 getting it flight certified okay um yeah 111 00:03:51,910 --> 00:03:49,200 so this is um the dna sequencer and it's 112 00:03:54,149 --> 00:03:51,920 commercially available yeah so can you 113 00:03:55,670 --> 00:03:54,159 tell me run through what is the process 114 00:03:58,869 --> 00:03:55,680 of getting it certified for space and 115 00:04:00,789 --> 00:03:58,879 what will the astronauts do with it okay 116 00:04:02,550 --> 00:04:00,799 so basically uh this is the sequencer 117 00:04:05,509 --> 00:04:02,560 and then this is a flow cell and this is 118 00:04:06,309 --> 00:04:05,519 kind of where the magic happens 119 00:04:08,149 --> 00:04:06,319 so 120 00:04:09,509 --> 00:04:08,159 basically to get it certified for 121 00:04:10,470 --> 00:04:09,519 flight the most important thing so that 122 00:04:11,910 --> 00:04:10,480 we want to make sure that it's not going 123 00:04:13,030 --> 00:04:11,920 to hurt the crew 124 00:04:15,270 --> 00:04:13,040 or the 125 00:04:16,870 --> 00:04:15,280 iss itself 126 00:04:18,229 --> 00:04:16,880 and then 127 00:04:19,909 --> 00:04:18,239 we'd also like to make sure that it's 128 00:04:21,189 --> 00:04:19,919 going to work and we don't you know we 129 00:04:23,510 --> 00:04:21,199 can't really test how well it's going to 130 00:04:25,030 --> 00:04:23,520 work in microgravity because the iss is 131 00:04:26,950 --> 00:04:25,040 the only place where you can 132 00:04:30,629 --> 00:04:26,960 get sustained microgravity for you know 133 00:04:32,230 --> 00:04:30,639 the hours that a sequencer would run 134 00:04:34,070 --> 00:04:32,240 and so then 135 00:04:36,390 --> 00:04:34,080 once we actually get it in flight 136 00:04:37,830 --> 00:04:36,400 there's on the flow cell here 137 00:04:39,590 --> 00:04:37,840 we're going to send up uh samples that 138 00:04:42,310 --> 00:04:39,600 we've prepared on the ground and the 139 00:04:43,990 --> 00:04:42,320 crew is going to thaw them out and 140 00:04:46,230 --> 00:04:44,000 basically inject them into a little 141 00:04:48,790 --> 00:04:46,240 sample port close it and then they push 142 00:04:50,550 --> 00:04:48,800 go and then the molecules flow down into 143 00:04:52,150 --> 00:04:50,560 this there's a little chip here that has 144 00:04:55,189 --> 00:04:52,160 nanopores 145 00:04:58,870 --> 00:04:55,199 and as the dna or rna passes through the 146 00:05:00,790 --> 00:04:58,880 nanopore you get a change in current 147 00:05:02,469 --> 00:05:00,800 that's diagnostic of the sequence and so 148 00:05:04,230 --> 00:05:02,479 you can from those changes and current 149 00:05:06,070 --> 00:05:04,240 get back what the sequence 150 00:05:08,310 --> 00:05:06,080 of the dna was 151 00:05:10,790 --> 00:05:08,320 and so for the first flight it's just a 152 00:05:13,110 --> 00:05:10,800 tech demonstration basically does do all 153 00:05:15,830 --> 00:05:13,120 the fluidics work uh is it can the crew 154 00:05:16,629 --> 00:05:15,840 members load the sample with space 155 00:05:18,070 --> 00:05:16,639 um 156 00:05:19,270 --> 00:05:18,080 that sort of thing what what challenges 157 00:05:20,310 --> 00:05:19,280 are there how well does the device 158 00:05:22,150 --> 00:05:20,320 perform 159 00:05:23,590 --> 00:05:22,160 and then in the future we'd like to 160 00:05:24,950 --> 00:05:23,600 build where we're actually doing the 161 00:05:28,870 --> 00:05:24,960 sample prep 162 00:05:30,629 --> 00:05:28,880 yeah because we haven't done this before 163 00:05:32,870 --> 00:05:30,639 so we need to make sure we know that 164 00:05:34,950 --> 00:05:32,880 it's it's actually working properly in 165 00:05:36,950 --> 00:05:34,960 microgravity if there would be any 166 00:05:40,150 --> 00:05:36,960 changes or anything like that to that 167 00:05:42,310 --> 00:05:40,160 device um and so what what do the 168 00:05:44,629 --> 00:05:42,320 astronauts do they will be loading the 169 00:05:45,749 --> 00:05:44,639 samples into the device as well yeah 170 00:05:47,670 --> 00:05:45,759 when they're in space when they're doing 171 00:05:49,510 --> 00:05:47,680 this okay and i understand you're also 172 00:05:51,510 --> 00:05:49,520 performing some testing here on earth 173 00:05:53,189 --> 00:05:51,520 can you tell me about 174 00:05:54,710 --> 00:05:53,199 yeah so we're 175 00:05:56,150 --> 00:05:54,720 basically to try and eliminate as many 176 00:05:58,550 --> 00:05:56,160 variables as we can we're going to 177 00:06:00,230 --> 00:05:58,560 prepare um identical samples that they 178 00:06:01,110 --> 00:06:00,240 have in flight we'll have them on the 179 00:06:02,550 --> 00:06:01,120 ground 180 00:06:03,830 --> 00:06:02,560 and as close as we can to when the 181 00:06:05,110 --> 00:06:03,840 astronaut 182 00:06:07,670 --> 00:06:05,120 is actually doing the experiment we're 183 00:06:10,870 --> 00:06:07,680 going to try to sequence the same sample 184 00:06:12,870 --> 00:06:10,880 on earth so that we'll know 185 00:06:14,230 --> 00:06:12,880 basically how well the sample is 186 00:06:15,749 --> 00:06:14,240 performing 187 00:06:17,670 --> 00:06:15,759 so that basically hopefully the only 188 00:06:19,029 --> 00:06:17,680 variable will be the actual microgravity 189 00:06:20,790 --> 00:06:19,039 environment 190 00:06:22,550 --> 00:06:20,800 rather than you know well if it's a 191 00:06:24,070 --> 00:06:22,560 different sample or 192 00:06:26,390 --> 00:06:24,080 some process is different it's sat 193 00:06:28,309 --> 00:06:26,400 around for a longer period of time 194 00:06:30,070 --> 00:06:28,319 great well thank you so much for coming 195 00:06:31,749 --> 00:06:30,080 out today and talking about this when 196 00:06:33,670 --> 00:06:31,759 does this launch 197 00:06:35,670 --> 00:06:33,680 again set in 198 00:06:37,590 --> 00:06:35,680 spring spring time of next year okay so 199 00:06:39,670 --> 00:06:37,600 we look forward to uh 200 00:06:41,590 --> 00:06:39,680 hearing all about that and good luck on